|
Cloning and expression analysis of mstn in Scomberomorus niphonius
SHI Jun-xin, XUE Liang-yi,HUANG Hong-li,ZHENG Chun-jing
2015, 32 (6):
12.
Scomberomorus niphonius is widely distributed in China’s coastal area. It is a kind of migratory species and has been a very important part in China’s fishery catches till now. mstn has attracted the attention of large numbers of researchers since its important effect on muscle growth. Homology cloning and rapid amplification of cDNA ends (RACE) were employed to clone mstn of S. niphonius, and its structural characteristics and phylogenetic relationship were also analyzed in this paper. The length of cloned mstn was 3870bp, including 1131bp of 3 exons and 1201bp of 2 introns. ExonⅠ, intronⅠ, exonⅡ, intronⅡ and exonⅢ were 379bp, 374bp, 371bp, 827bp, and 381bp, respectively. 5’UTR and 3’UTR were 108bp and 1430bp, respectively. A polyA signal AATAAA was found in 3’UTR. The whole sequences encoded 376 amino acids, containing a putative signal peptide (1aa~22aa), a TGF-β propeptide domain (37aa~257aa) and a TGF-β functional domain (282aa~376aa). Two microsatellites were found, (CA)5 in intronⅡ and (CA)10TG(CA)6CT(CA)10 in 3’UTR. The similar microsatellites were also found in other fishes, which suggested that these regions might have some special functions. The common domains of vertebrate MSTNs were found in S. niphonius MSTN, including a conservative hydrolytic site (RARR) and 9 cysteine residues. The phylogeny analysis showed that the relationship between S. niphonius and Siniperca chuatsi was the closest, and S. niphonius grouped into the same branch with other Percomorpha fishes. mstn expressions in different tissues were examined by qPCR, and β-actin was employed as housekeeping gene. qPCR results showed that mstn transcriptional level varied among different tissues in two years old S. niphonius, with a high expression in gill, liver and kidney, and a low expression in muscle, intestine, stomach, spleen and gonad. These results provided useful information for the study of the molecular mechanism of S. niphonius muscle growth and development.
Related Articles |
Metrics
|